STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900104605_01999Unannotated protein. (557 aa)    
Predicted Functional Partners:
GCA_900104605_01998
Unannotated protein.
       0.773
GCA_900104605_02000
Unannotated protein.
 
     0.720
GCA_900104605_02001
Unannotated protein.
       0.682
GCA_900104605_01997
Unannotated protein.
   
   0.646
GCA_900104605_02002
Unannotated protein.
       0.606
GCA_900104605_01995
Unannotated protein.
       0.522
GCA_900104605_01996
Unannotated protein.
       0.522
GCA_900104605_00049
Unannotated protein.
   
  0.471
GCA_900104605_00053
Unannotated protein.
   
  0.471
GCA_900104605_00054
Unannotated protein.
   
  0.471
Your Current Organism:
Tidjanibacter massiliensis
NCBI taxonomy Id: 1871003
Other names: Alistipes sp. Marseille-P3084, CSUR P3084, DSM 103552, T. massiliensis, strain Marseille-P3084
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.