STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0033KEGG: tbd:Tbd_2125 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase. (237 aa)    
Predicted Functional Partners:
thiG
Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.834
Mlg_1946
KEGG: noc:Noc_2118 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein.
  
 
 0.821
Mlg_0035
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: csa:Csal_3147 thiamine biosynthesis protein ThiS.
       0.701
Mlg_0032
PFAM: aldo/keto reductase; KEGG: csa:Csal_3045 aldo/keto reductase.
       0.693
rpmD
PFAM: ribosomal protein L30; KEGG: tcx:Tcr_0313 ribosomal protein L30.
   
    0.682
Mlg_0620
PFAM: Fmu (Sun) domain protein; KEGG: hma:rrnAC0628 tRNA and rRNA cytosine-C5-methylase.
  
 
 0.665
Mlg_0311
PFAM: protein of unknown function DUF88; KEGG: dps:DP0904 hypothetical protein.
  
  
 0.651
Mlg_1835
PFAM: tRNA pseudouridine synthase D, TruD; KEGG: noc:Noc_0856 tRNA pseudouridine synthase D.
  
 
 0.626
Mlg_1976
23S rRNA Um-2552 2'-O-methyltransferase; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pae:PA4752 cell division protein ftsj homolog (ribosomal RNA large subunit methyltransferase J).
   
 
 0.614
Mlg_0440
TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: xcb:XC_4026 biotin acetyl-CoA-carboxylase synthetase.
     
 0.603
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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