STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0059PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3478 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Mlg_0058
PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein.
     
 0.644
Mlg_0048
PFAM: protein of unknown function DUF879; KEGG: vch:VCA0110 hypothetical protein.
  
  
 0.515
Mlg_0057
PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein.
  
  
 0.512
Mlg_0053
KEGG: vch:VCA0115 hypothetical protein.
  
  
 0.490
Mlg_0060
Hypothetical protein.
       0.481
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.481
Mlg_0456
TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu domain protein domain protein; elongation factor Tu, domain 2 protein; KEGG: noc:Noc_2338 translation elongation factor Tu.
    
   0.481
Mlg_0051
KEGG: plu:plu0366 hypothetical protein.
  
  
 0.477
Mlg_0046
PFAM: protein of unknown function DUF877; KEGG: vch:VCA0108 hypothetical protein.
  
  
 0.472
Mlg_0045
PFAM: Uncharacterised conserved protein UCP028301; KEGG: vch:VCA0107 hypothetical protein.
  
  
 0.468
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.