STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0072TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: csa:Csal_0544 arginine decarboxylase. (628 aa)    
Predicted Functional Partners:
Mlg_0073
TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: csa:Csal_0119 spermidine synthase.
    
 0.868
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sde:Sde_3670 response regulator receiver domain protein (CheY-like).
     
 0.832
Mlg_1443
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gme:Gmet_0711 porphyromonas-type peptidyl-arginine deiminase.
 
  
 0.821
Mlg_1444
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gsu:GSU1027 glycosyl hydrolase, family 10.
 
   
 0.525
Mlg_1422
[Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: ppr:PBPRA1194 putative malonyl Coa-acyl carrier protein transacylase.
   
    0.412
Mlg_0074
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.404
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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