STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0356PFAM: response regulator receiver; KEGG: pae:PA0409 twitching motility protein PilH. (121 aa)    
Predicted Functional Partners:
Mlg_0358
PFAM: chemotaxis sensory transducer; KEGG: pae:PA0411 twitching motility protein PilJ.
 
 0.991
Mlg_0359
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase.
 
0.991
Mlg_0357
PFAM: CheW domain protein; KEGG: ppu:PP4990 type IV pili signal transduction protein PilI.
 
 
 0.990
Mlg_1802
GAF sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dvu:DVU2677 sensor histidine kinase/response regulator.
 
 0.968
Mlg_2430
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_1009 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal.
 
 0.920
Mlg_1369
KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 
 0.913
Mlg_1012
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb4415 FOG: GGDEF domain.
 
 
  
 0.901
Mlg_1521
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor.
 
 
    0.901
Mlg_1806
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pae:PA3177 hypothetical protein.
 
 
  
 0.899
Mlg_0164
Diguanylate cyclase; KEGG: dps:DP2951 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 
 0.887
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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