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rplT protein (Alkalilimnicola ehrlichii) - STRING interaction network
"rplT" - 50S ribosomal protein L20 in Alkalilimnicola ehrlichii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (119 aa)    
Predicted Functional Partners:
rpmI
PFAM- ribosomal protein L35; KEGG- noc-Noc_1142 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
 
  0.999
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (117 aa)
 
 
  0.997
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (104 aa)
   
 
  0.995
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
 
 
  0.994
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (125 aa)
   
 
  0.993
rpsI
PFAM- ribosomal protein S9; KEGG- ilo-IL0415 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
 
 
  0.992
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (111 aa)
   
 
  0.991
frr
Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another (185 aa)
 
 
  0.991
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (74 aa)
 
 
  0.990
rplQ
PFAM- ribosomal protein L17; KEGG- ilo-IL1890 ribosomal protein L17 (137 aa)
   
 
  0.990
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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