STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0847PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: csa:Csal_0476 GTP1/OBG subdomain. (358 aa)    
Predicted Functional Partners:
rpmA
PFAM: ribosomal protein L27; KEGG: vch:VC0436 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 0.992
Mlg_0845
PFAM: ribosomal protein L21; KEGG: vvy:VV0470 ribosomal protein L21.
 
 
 0.963
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.937
Mlg_0405
TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: csa:Csal_1543 iojap-related protein.
  
 
 0.902
Mlg_0848
KEGG: noc:Noc_3036 glutamate 5-kinase, ProB-related; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein.
  
  
 0.887
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
 0.873
rplQ
PFAM: ribosomal protein L17; KEGG: ilo:IL1890 ribosomal protein L17.
   
 
 0.833
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mca:MCA2005 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.826
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.822
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
   
 
 0.813
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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