STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplSLSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa)    
Predicted Functional Partners:
Mlg_0886
KEGG: csa:Csal_3014 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase.
  
 0.998
Mlg_0884
PFAM: ribosomal protein S16; KEGG: csa:Csal_3016 ribosomal protein S16.
 
 
 0.997
Mlg_0845
PFAM: ribosomal protein L21; KEGG: vvy:VV0470 ribosomal protein L21.
 
 
 0.994
Mlg_0885
TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: noc:Noc_2259 16S rRNA processing protein RimM.
  
 0.994
Mlg_0467
PFAM: ribosomal protein S17; KEGG: ppu:PP0463 ribosomal protein S17.
  
 
 0.992
rpmA
PFAM: ribosomal protein L27; KEGG: vch:VC0436 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.991
rplA
LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
 
 
 0.989
rplQ
PFAM: ribosomal protein L17; KEGG: ilo:IL1890 ribosomal protein L17.
 
 
 0.989
Mlg_0473
PFAM: ribosomal protein L6; KEGG: ppu:PP0469 ribosomal protein L6.
  
 
 0.988
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.988
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.