STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_0999PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_04007 parvulin-like peptidyl-prolyl isomerase. (260 aa)    
Predicted Functional Partners:
Mlg_1001
TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: hch:HCH_04009 nitrate reductase molybdenum cofactor assembly chaperone.
 
    0.959
Mlg_1000
TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: csa:Csal_1333 respiratory nitrate reductase, gamma subunit.
 
    0.957
Mlg_1003
KEGG: csa:Csal_1330 nitrate reductase, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
    0.940
Mlg_1002
TIGRFAM: nitrate reductase, beta subunit; KEGG: bms:BRA0298 respiratory nitrate reductase, beta subunit.
 
    0.934
Mlg_0998
KEGG: rfr:Rfer_2344 hypothetical protein.
       0.764
Mlg_0997
PFAM: DsrC family protein; KEGG: tbd:Tbd_2480 putative sulfite reductase.
       0.726
Mlg_1004
KEGG: eba:ebA6288 nitrate/nitrite antiporter.
 
    0.691
Mlg_0996
Hypothetical protein.
       0.651
Mlg_0193
PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0333 major facilitator superfamily MFS_1.
 
    0.587
Mlg_1280
GTP cyclohydrolase subunit MoaA; KEGG: mca:MCA1949 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
 
 0.491
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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