STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1139KEGG: pfo:Pfl_2628 hypothetical protein. (336 aa)    
Predicted Functional Partners:
Mlg_1134
PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat.
  
     0.739
Mlg_1141
KEGG: pfo:Pfl_2625 hypothetical protein.
 
    
0.607
Mlg_1140
KEGG: pfo:Pfl_2629 hypothetical protein.
       0.598
Mlg_0648
PFAM: Peptidoglycan-binding LysM.
  
     0.498
Mlg_1142
KEGG: pfo:Pfl_2629 hypothetical protein.
       0.485
Mlg_1145
PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein.
 
    0.479
Mlg_1753
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_1133 AAA ATPase, central region.
   
 0.432
Mlg_2321
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL0540 ABC-type multidrug transport system, ATPase and permease components.
  
  
  0.413
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.