STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1302TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mca:MCA1234 glutamyl-tRNA synthetase. (471 aa)    
Predicted Functional Partners:
Mlg_2763
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: hch:HCH_05965 glutamate synthase domain 2.
  
 
 0.929
Mlg_0460
PFAM: Ribosomal protein L25/L23; KEGG: pha:PSHAa0146 50S ribosomal protein L23.
   
 0.925
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.925
Mlg_0473
PFAM: ribosomal protein L6; KEGG: ppu:PP0469 ribosomal protein L6.
   
 0.922
Mlg_1811
glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: noc:Noc_2250 glutamyl-tRNA synthetase.
  
  
 
0.916
Mlg_0279
PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: noc:Noc_0510 glutamyl-tRNA reductase.
     
 0.913
Mlg_0459
PFAM: ribosomal protein L4/L1e; KEGG: ilo:IL1923 ribosomal protein L4.
  
 0.910
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
 0.909
Mlg_0474
TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: csa:Csal_0437 ribosomal protein L18.
   
 0.899
Mlg_0467
PFAM: ribosomal protein S17; KEGG: ppu:PP0463 ribosomal protein S17.
   
 
 0.895
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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