STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1496PFAM: Haem oxygenase; KEGG: dra:DRA0052m heme oxygenase. (222 aa)    
Predicted Functional Partners:
Mlg_1497
Putative GAF sensor protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-2 domain protein; KEGG: rsp:RSP_4191 phytochrome sensor diguanylate cyclase/phosphodiesterase.
 
   
 0.910
Mlg_0430
TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: cvi:CV3399 bacterioferritin.
     
 0.902
Mlg_0301
TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: mca:MCA0062 protoheme IX farnesyl transferase.
     
  0.900
Mlg_0737
PFAM: ferrochelatase; KEGG: noc:Noc_1545 ferrochelatase.
     
  0.900
Mlg_1498
PFAM: alpha/beta hydrolase fold; KEGG: sru:SRU_2682 3-oxoadipate enol-lactone hydrolase.
       0.519
Mlg_1495
Hypothetical protein.
       0.461
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.