STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_2836PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: mca:MCA2743 ribulose bisphosphate carboxylase, large subunit. (473 aa)    
Predicted Functional Partners:
Mlg_2837
PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: mca:MCA2744 ribulose bisphosphate carboxylase, small subunit.
 
 0.999
Mlg_2833
PFAM: phosphoribulokinase/uridine kinase; KEGG: syd:Syncc9605_1864 phosphoribulokinase.
 
 
 0.984
Mlg_1168
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein.
  
  
 
0.928
Mlg_2251
TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_2324 phosphoglycolate phosphatase.
    
 0.914
Mlg_2842
PFAM: phosphoglycerate kinase; KEGG: noc:Noc_2806 phosphoglycerate kinase.
    
 0.909
Mlg_2835
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: noc:Noc_0334 transcriptional regulatory protein, LysR family.
 
   
 0.845
Mlg_2612
TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hch:HCH_01076 sec-independent protein secretion pathway components.
      
 0.816
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
      
 0.771
Mlg_2839
PFAM: von Willebrand factor, type A; KEGG: mca:MCA2754 CbbO protein.
 
   
 0.714
Mlg_0810
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cyb:CYB_0748 HAD-superfamily hydrolase, subfamily IA, variant 3.
 
     0.698
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.