STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW28821.1PAP2 superfamily protein. (263 aa)    
Predicted Functional Partners:
SEW47140.1
AMP-binding enzyme C-terminal domain-containing protein; Partial gene; manually curated.
   
 0.871
SEV87447.1
Amino acid adenylation domain-containing protein; Partial gene; manually curated.
   
 0.841
SEW42752.1
Surfactin family lipopeptide synthetase A.
   
 0.816
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.814
SEW07240.1
Cytochrome P450.
    
  0.789
SEW46721.1
Hypothetical protein.
    
  0.789
SEW02268.1
Hypothetical protein.
    
  0.777
SEW28812.1
HD domain-containing protein.
 
     0.701
SEW45812.1
Starch-binding associating with outer membrane.
  
 
   0.510
SEW36007.1
Starch-binding associating with outer membrane.
  
 
   0.492
Your Current Organism:
Chitinophaga sp. YR573
NCBI taxonomy Id: 1881040
Other names: C. sp. YR573
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