STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA76658.1Aspartate aminotransferase. (399 aa)    
Predicted Functional Partners:
SKA78487.1
Glutamate synthase (NADH) large subunit.
    
 0.953
SKA72764.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.942
SKA86235.1
Chorismate mutase.
 
 
 0.878
SKA83843.1
Dipeptidase D.
 
 
  0.877
SKA76559.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 0.871
SKA73943.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 0.869
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.865
SKA90689.1
Asparagine synthase (glutamine-hydrolysing).
   
 
 0.849
SKA76184.1
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
 
  0.847
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.823
Your Current Organism:
Clostridium sp. USBA49
NCBI taxonomy Id: 1881060
Other names: C. sp. USBA 49, Clostridium sp. USBA 49
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