STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS78886.1Sporulation protein YabP. (94 aa)    
Predicted Functional Partners:
SDS78865.1
Spore cortex biosynthesis protein YabQ.
 
  
 0.980
SDT36565.1
Similar to stage IV sporulation protein.
 
   
 0.829
SDS97514.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.812
SDS96303.1
Stage II sporulation protein R.
  
  
 0.806
SDT34784.1
Stage II sporulation protein P.
  
   
 0.795
spoIIAB
Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.794
SDS79144.1
AbrB family transcriptional regulator, stage V sporulation protein T.
 
     0.789
SDR88177.1
Stage IV sporulation protein B.
  
   
 0.783
SDT44880.1
Sporulation integral membrane protein YlbJ.
  
   
 0.783
SDR84735.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.780
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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