WDR81 protein (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WDR81

WD repeat-containing protein 81. (886 aa)

Predicted Functional Partners:

WDR91

0.941

VPS18

0.760

FIG4

0.713

SEC63

0.698

CCZ1

0.698

PIK3C3

0.698

UVRAG

0.695

ATP6V0C

0.647

WRAP73

0.620

COG2

0.619

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V0C	WDR81	A0A091JJD8	A0A091JN25	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	WD repeat-containing protein 81.	0.647
CCZ1	FIG4	A0A091JJ34	A0A091KAS4	Vacuolar fusion protein CCZ1.	Polyphosphoinositide phosphatase.	0.508
CCZ1	PIK3C3	A0A091JJ34	A0A091JU29	Vacuolar fusion protein CCZ1.	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	0.538
CCZ1	VPS18	A0A091JJ34	A0A091J956	Vacuolar fusion protein CCZ1.	Vacuolar protein sorting-associated protein 18.	0.963
CCZ1	WDR81	A0A091JJ34	A0A091JN25	Vacuolar fusion protein CCZ1.	WD repeat-containing protein 81.	0.698
CCZ1	WDR91	A0A091JJ34	A0A091JP45	Vacuolar fusion protein CCZ1.	WD repeat-containing protein 91.	0.467
COG2	SEC63	A0A091K9F9	A0A091INN4	Conserved oligomeric Golgi complex subunit 2.	Translocation protein SEC63.	0.459
COG2	WDR81	A0A091K9F9	A0A091JN25	Conserved oligomeric Golgi complex subunit 2.	WD repeat-containing protein 81.	0.619
FIG4	CCZ1	A0A091KAS4	A0A091JJ34	Polyphosphoinositide phosphatase.	Vacuolar fusion protein CCZ1.	0.508
FIG4	PIK3C3	A0A091KAS4	A0A091JU29	Polyphosphoinositide phosphatase.	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	0.948
FIG4	UVRAG	A0A091KAS4	A0A091J430	Polyphosphoinositide phosphatase.	UV radiation resistance-associated gene protein.	0.446
FIG4	WDR81	A0A091KAS4	A0A091JN25	Polyphosphoinositide phosphatase.	WD repeat-containing protein 81.	0.713
PIK3C3	CCZ1	A0A091JU29	A0A091JJ34	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	Vacuolar fusion protein CCZ1.	0.538
PIK3C3	FIG4	A0A091JU29	A0A091KAS4	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	Polyphosphoinositide phosphatase.	0.948
PIK3C3	UVRAG	A0A091JU29	A0A091J430	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	UV radiation resistance-associated gene protein.	0.992
PIK3C3	VPS18	A0A091JU29	A0A091J956	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	Vacuolar protein sorting-associated protein 18.	0.580
PIK3C3	WDR81	A0A091JU29	A0A091JN25	Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	WD repeat-containing protein 81.	0.698
SEC63	COG2	A0A091INN4	A0A091K9F9	Translocation protein SEC63.	Conserved oligomeric Golgi complex subunit 2.	0.459
SEC63	WDR81	A0A091INN4	A0A091JN25	Translocation protein SEC63.	WD repeat-containing protein 81.	0.698
UVRAG	FIG4	A0A091J430	A0A091KAS4	UV radiation resistance-associated gene protein.	Polyphosphoinositide phosphatase.	0.446