A0A5C3Q6Y4 protein (Pterula gracilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3Q6Y4

Uncharacterized protein. (767 aa)

Predicted Functional Partners:

A0A5C3R4T5

0.989

A0A5C3QZR4

0.672

A0A5C3QDZ7

0.665

A0A5C3QXY7

0.664

A0A5C3QZY7

0.663

A0A5C3R726

0.663

A0A5C3QE61

0.648

A0A5C3QCC8

0.633

A0A5C3QQG7

0.633

A0A5C3QRP9

0.633

Your Current Organism:

Pterula gracilis

NCBI taxonomy Id: 1884261
Other names: Hirsutella gracilis, P. gracilis, Pistillaria gracilis, Typhula gracilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3Q6Y4	A0A5C3QCC8	Uncharacterized protein.	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.633
A0A5C3Q6Y4	A0A5C3QDZ7	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.665
A0A5C3Q6Y4	A0A5C3QE61	Uncharacterized protein.	Synaptobrevin-domain-containing protein.	0.648
A0A5C3Q6Y4	A0A5C3QQG7	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.633
A0A5C3Q6Y4	A0A5C3QRP9	Uncharacterized protein.	Developmentally regulated GTP-binding protein.	0.633
A0A5C3Q6Y4	A0A5C3QXY7	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.664
A0A5C3Q6Y4	A0A5C3QZR4	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.672
A0A5C3Q6Y4	A0A5C3QZY7	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.663
A0A5C3Q6Y4	A0A5C3R4T5	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A5C3Q6Y4	A0A5C3R726	Uncharacterized protein.	t-SNARE.	0.663
A0A5C3QCC8	A0A5C3Q6Y4	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.633
A0A5C3QCC8	A0A5C3QQG7	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.682
A0A5C3QCC8	A0A5C3QRP9	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Developmentally regulated GTP-binding protein.	0.669
A0A5C3QCC8	A0A5C3QZR4	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.803
A0A5C3QCC8	A0A5C3QZY7	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.788
A0A5C3QCC8	A0A5C3R4T5	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.989
A0A5C3QCC8	A0A5C3R726	Mitochondrial carrier domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	t-SNARE.	0.800
A0A5C3QDZ7	A0A5C3Q6Y4	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.665
A0A5C3QDZ7	A0A5C3QE61	P-loop containing nucleoside triphosphate hydrolase protein.	Synaptobrevin-domain-containing protein.	0.819
A0A5C3QDZ7	A0A5C3QXY7	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.795