STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG38581.1uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (277 aa)    
Predicted Functional Partners:
SMG05899.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
 
 0.998
SMG44339.1
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
 0.994
SMG38592.1
Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 0.984
SMG44303.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.906
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
    
 0.839
SMG38615.1
Phosphoadenosine phosphosulfate reductase.
 
  
 0.835
SMG30927.1
uroporphyrinogen-III synthase.
  
 
 0.829
SMG44335.1
uroporphyrinogen-III synthase.
  
 
 0.829
SMG47975.1
uroporphyrin-III C-methyltransferase.
  
  
 
0.815
SMG38607.1
Sulfate adenylyltransferase subunit 2.
 
  
 0.807
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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