STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97747.1Hypothetical protein. (436 aa)    
Predicted Functional Partners:
AMP97746.1
Hypothetical protein; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
       0.855
AMQ01169.1
Hypothetical protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.629
AMQ01671.1
Membrane protein.
  
     0.629
AMP97748.1
Pfam:pfam12844 Helix-turn-helix domain.
 
     0.556
AMQ00577.1
Hypothetical protein.
  
     0.542
AMP99904.1
Pfam:pfam13505 Outer membrane protein beta-barrel domain.
  
     0.540
AMQ01811.1
Hypothetical protein.
  
     0.520
AMQ01883.1
Hypothetical protein.
  
     0.515
AMP97745.1
Hypothetical protein; Pfam:pfam14344 Domain of unknown function (DUF4397).
 
     0.508
AMQ00627.1
Seryl-tRNA synthetase.
  
     0.507
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.