STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_0873PQQ enzyme repeat domain protein. (570 aa)    
Predicted Functional Partners:
MA_3259
Serine/threonine specific protein phosphatase.
 
 0.898
MA_3206
Conserved hypothetical protein.
  
 
 0.895
MA_2513
mRNA 3-end processing factor.
  
 
 0.893
MA_3365
Predicted protein.
 
 0.884
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.881
alaXM
alanyl-tRNA synthetase domain protein; Functions in trans to edit the amino acid moiety from mischarged charged tRNA(Ala).
  
 0.881
cbiQ-2
ABC transporter, permease protein.
 
   
 0.878
MA_2888
Histone deacetylase.
   
 0.874
MA_0189
Helicase (SNF2 family).
   
 0.872
MA_3404
GTPase.
 
 0.865
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.