Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_0965 | LA_0966 | LA_0965 | LA_0966 | Exodeoxyribonuclease v gamma chain. | Exodeoxyribonuclease V beta chain. | 0.994 |
LA_0965 | LA_0967 | LA_0965 | LA_0967 | Exodeoxyribonuclease v gamma chain. | Exodeoxyribonuclease v alpha chain. | 0.990 |
LA_0965 | LA_0970 | LA_0965 | LA_0970 | Exodeoxyribonuclease v gamma chain. | ABC transporter permease protein. | 0.496 |
LA_0965 | LA_3814 | LA_0965 | LA_3814 | Exodeoxyribonuclease v gamma chain. | Conserved hypothetical protein. | 0.769 |
LA_0965 | ccmA-2 | LA_0965 | LA_0969 | Exodeoxyribonuclease v gamma chain. | ATP-binding protein of an ABC transporter complex. | 0.496 |
LA_0965 | recQ-2 | LA_0965 | LA_0964 | Exodeoxyribonuclease v gamma chain. | ATP-dependent DNA helicase RecQ. | 0.664 |
LA_0966 | LA_0965 | LA_0966 | LA_0965 | Exodeoxyribonuclease V beta chain. | Exodeoxyribonuclease v gamma chain. | 0.994 |
LA_0966 | LA_0967 | LA_0966 | LA_0967 | Exodeoxyribonuclease V beta chain. | Exodeoxyribonuclease v alpha chain. | 0.995 |
LA_0966 | LA_0970 | LA_0966 | LA_0970 | Exodeoxyribonuclease V beta chain. | ABC transporter permease protein. | 0.502 |
LA_0966 | LA_3814 | LA_0966 | LA_3814 | Exodeoxyribonuclease V beta chain. | Conserved hypothetical protein. | 0.774 |
LA_0966 | ccmA-2 | LA_0966 | LA_0969 | Exodeoxyribonuclease V beta chain. | ATP-binding protein of an ABC transporter complex. | 0.496 |
LA_0966 | dnaE | LA_0966 | LA_0258 | Exodeoxyribonuclease V beta chain. | DNA polymerase III alpha subunit. | 0.574 |
LA_0966 | lig | LA_0966 | LA_4119 | Exodeoxyribonuclease V beta chain. | NAD dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.526 |
LA_0966 | polA | LA_0966 | LA_3625 | Exodeoxyribonuclease V beta chain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.500 |
LA_0966 | recA | LA_0966 | LA_2179 | Exodeoxyribonuclease V beta chain. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.564 |
LA_0966 | recQ-2 | LA_0966 | LA_0964 | Exodeoxyribonuclease V beta chain. | ATP-dependent DNA helicase RecQ. | 0.668 |
LA_0967 | LA_0965 | LA_0967 | LA_0965 | Exodeoxyribonuclease v alpha chain. | Exodeoxyribonuclease v gamma chain. | 0.990 |
LA_0967 | LA_0966 | LA_0967 | LA_0966 | Exodeoxyribonuclease v alpha chain. | Exodeoxyribonuclease V beta chain. | 0.995 |
LA_0967 | LA_0970 | LA_0967 | LA_0970 | Exodeoxyribonuclease v alpha chain. | ABC transporter permease protein. | 0.514 |
LA_0967 | ccmA-2 | LA_0967 | LA_0969 | Exodeoxyribonuclease v alpha chain. | ATP-binding protein of an ABC transporter complex. | 0.496 |
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