Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_1164 | LA_1422 | LA_1164 | LA_1422 | Serine/threonine kinase. | Serine/threonine kinase with GAF and PP2C domains. | 0.625 |
LA_1164 | ptc1 | LA_1164 | LA_1428 | Serine/threonine kinase. | Serine/threonine phosphatase. | 0.680 |
LA_1422 | LA_1164 | LA_1422 | LA_1164 | Serine/threonine kinase with GAF and PP2C domains. | Serine/threonine kinase. | 0.625 |
LA_1422 | ptc1 | LA_1422 | LA_1428 | Serine/threonine kinase with GAF and PP2C domains. | Serine/threonine phosphatase. | 0.716 |
LA_1596 | fmt | LA_1596 | LA_2396 | methionyl-tRNA(fmet) n-formyltransferase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.918 |
LA_1596 | gcvT | LA_1596 | LA_0362 | methionyl-tRNA(fmet) n-formyltransferase. | Glycine cleavage T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.915 |
LA_1596 | ptc1 | LA_1596 | LA_1428 | methionyl-tRNA(fmet) n-formyltransferase. | Serine/threonine phosphatase. | 0.809 |
LA_2395 | LA_3848 | LA_2395 | LA_3848 | Hypothetical protein. | Hypothetical protein. | 0.504 |
LA_2395 | fmt | LA_2395 | LA_2396 | Hypothetical protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.865 |
LA_2395 | ptc1 | LA_2395 | LA_1428 | Hypothetical protein. | Serine/threonine phosphatase. | 0.812 |
LA_3848 | LA_2395 | LA_3848 | LA_2395 | Hypothetical protein. | Hypothetical protein. | 0.504 |
LA_3848 | ptc1 | LA_3848 | LA_1428 | Hypothetical protein. | Serine/threonine phosphatase. | 0.922 |
acoB | gcvT | LA_2009 | LA_0362 | Pyruvate dehydrogenase beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glycine cleavage T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.717 |
acoB | prsA | LA_2009 | LA_3822 | Pyruvate dehydrogenase beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Phosphoribosyl pyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.975 |
acoB | ptc1 | LA_2009 | LA_1428 | Pyruvate dehydrogenase beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Serine/threonine phosphatase. | 0.830 |
fmt | LA_1596 | LA_2396 | LA_1596 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | methionyl-tRNA(fmet) n-formyltransferase. | 0.918 |
fmt | LA_2395 | LA_2396 | LA_2395 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Hypothetical protein. | 0.865 |
fmt | gcvT | LA_2396 | LA_0362 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Glycine cleavage T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.915 |
fmt | ptc1 | LA_2396 | LA_1428 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Serine/threonine phosphatase. | 0.809 |
gcvT | LA_1596 | LA_0362 | LA_1596 | Glycine cleavage T protein; The glycine cleavage system catalyzes the degradation of glycine. | methionyl-tRNA(fmet) n-formyltransferase. | 0.915 |
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