Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_0141 | cyaA-7 | LA_0141 | LA_2968 | Metal-dependent hydrolase of the beta-lactamase superfamily I. | Adenylate/guanylate cyclase. | 0.512 |
LA_4008 | crp-3 | LA_4008 | LA_1337 | Adenylate/guanylate cyclase. | cAMP-binding protein. | 0.491 |
LA_4008 | crp-6 | LA_4008 | LB_031 | Adenylate/guanylate cyclase. | Cyclic nucleotide-binding protein. | 0.459 |
LA_4008 | cyaA-7 | LA_4008 | LA_2968 | Adenylate/guanylate cyclase. | Adenylate/guanylate cyclase. | 0.797 |
LA_4008 | folE | LA_4008 | LA_4255 | Adenylate/guanylate cyclase. | GTP cyclohydrolase I. | 0.800 |
LA_4008 | ndk | LA_4008 | LA_4168 | Adenylate/guanylate cyclase. | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.904 |
LA_4008 | pykF | LA_4008 | LA_2924 | Adenylate/guanylate cyclase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.650 |
LA_4008 | pykF-2 | LA_4008 | LB_353 | Adenylate/guanylate cyclase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.650 |
LA_4008 | ribB | LA_4008 | LA_1147 | Adenylate/guanylate cyclase. | Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.806 |
LA_4008 | spoT | LA_4008 | LA_3085 | Adenylate/guanylate cyclase. | Guanosine polyphosphate pyrophosphohydrolase/synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.900 |
crp-3 | LA_4008 | LA_1337 | LA_4008 | cAMP-binding protein. | Adenylate/guanylate cyclase. | 0.491 |
crp-3 | crp-6 | LA_1337 | LB_031 | cAMP-binding protein. | Cyclic nucleotide-binding protein. | 0.769 |
crp-3 | cyaA-7 | LA_1337 | LA_2968 | cAMP-binding protein. | Adenylate/guanylate cyclase. | 0.510 |
crp-6 | LA_4008 | LB_031 | LA_4008 | Cyclic nucleotide-binding protein. | Adenylate/guanylate cyclase. | 0.459 |
crp-6 | crp-3 | LB_031 | LA_1337 | Cyclic nucleotide-binding protein. | cAMP-binding protein. | 0.769 |
crp-6 | cyaA-7 | LB_031 | LA_2968 | Cyclic nucleotide-binding protein. | Adenylate/guanylate cyclase. | 0.559 |
cyaA-7 | LA_0141 | LA_2968 | LA_0141 | Adenylate/guanylate cyclase. | Metal-dependent hydrolase of the beta-lactamase superfamily I. | 0.512 |
cyaA-7 | LA_4008 | LA_2968 | LA_4008 | Adenylate/guanylate cyclase. | Adenylate/guanylate cyclase. | 0.797 |
cyaA-7 | crp-3 | LA_2968 | LA_1337 | Adenylate/guanylate cyclase. | cAMP-binding protein. | 0.510 |
cyaA-7 | crp-6 | LA_2968 | LB_031 | Adenylate/guanylate cyclase. | Cyclic nucleotide-binding protein. | 0.559 |
page 1 of 4