Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HemA | HemG | LB_010 | LB_020 | glutamyl-tRNA reductase. | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | 0.895 |
HemA | LB_014 | LB_010 | LB_014 | glutamyl-tRNA reductase. | Sensor protein of a two component response regulator. | 0.967 |
HemA | hemB | LB_010 | LB_012 | glutamyl-tRNA reductase. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.973 |
HemA | hemC | LB_010 | LB_011 | glutamyl-tRNA reductase. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.995 |
HemA | hemE | LB_010 | LB_016 | glutamyl-tRNA reductase. | Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. | 0.977 |
HemA | hemH | LB_010 | LB_024 | glutamyl-tRNA reductase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. | 0.748 |
HemA | hemL | LB_010 | LB_013 | glutamyl-tRNA reductase. | Glutamate-1-semialdehyde aminotransferase. | 0.997 |
HemA | hemN | LB_010 | LA_2563 | glutamyl-tRNA reductase. | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.692 |
HemA | hemN-2 | LB_010 | LB_017 | glutamyl-tRNA reductase. | Coproporphyrinogen 3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.960 |
HemA | ompR | LB_010 | LB_015 | glutamyl-tRNA reductase. | Response regulator. | 0.926 |
HemG | HemA | LB_020 | LB_010 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | glutamyl-tRNA reductase. | 0.895 |
HemG | LB_014 | LB_020 | LB_014 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Sensor protein of a two component response regulator. | 0.462 |
HemG | hemB | LB_020 | LB_012 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.893 |
HemG | hemC | LB_020 | LB_011 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.773 |
HemG | hemE | LB_020 | LB_016 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. | 0.998 |
HemG | hemH | LB_020 | LB_024 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. | 0.991 |
HemG | hemL | LB_020 | LB_013 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Glutamate-1-semialdehyde aminotransferase. | 0.899 |
HemG | hemN-2 | LB_020 | LB_017 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Coproporphyrinogen 3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.967 |
HemG | ompR | LB_020 | LB_015 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Response regulator. | 0.452 |
LB_014 | HemA | LB_014 | LB_010 | Sensor protein of a two component response regulator. | glutamyl-tRNA reductase. | 0.967 |
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