Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LA_2699 | alr | LA_2699 | LB_317 | D-alanine--D-alanine ligase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.915 |
LA_2699 | ddlA | LA_2699 | LA_2058 | D-alanine--D-alanine ligase. | D-alanine--D-alanine ligase; Cell wall formation. | 0.930 |
LA_2699 | murF | LA_2699 | LA_1464 | D-alanine--D-alanine ligase. | UDP-N-acetylmuramyl pentapeptide synthase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.952 |
LB_316 | LB_318 | LB_316 | LB_318 | Hypothetical protein. | Putative acyltransferase. | 0.546 |
LB_316 | LB_319 | LB_316 | LB_319 | Hypothetical protein. | Hypothetical protein. | 0.521 |
LB_316 | LB_320 | LB_316 | LB_320 | Hypothetical protein. | Hypothetical protein. | 0.521 |
LB_316 | alr | LB_316 | LB_317 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.632 |
LB_318 | LB_316 | LB_318 | LB_316 | Putative acyltransferase. | Hypothetical protein. | 0.546 |
LB_318 | LB_319 | LB_318 | LB_319 | Putative acyltransferase. | Hypothetical protein. | 0.827 |
LB_318 | LB_320 | LB_318 | LB_320 | Putative acyltransferase. | Hypothetical protein. | 0.827 |
LB_318 | alr | LB_318 | LB_317 | Putative acyltransferase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.784 |
LB_319 | LB_316 | LB_319 | LB_316 | Hypothetical protein. | Hypothetical protein. | 0.521 |
LB_319 | LB_318 | LB_319 | LB_318 | Hypothetical protein. | Putative acyltransferase. | 0.827 |
LB_319 | LB_320 | LB_319 | LB_320 | Hypothetical protein. | Hypothetical protein. | 0.856 |
LB_319 | alr | LB_319 | LB_317 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.762 |
LB_320 | LB_316 | LB_320 | LB_316 | Hypothetical protein. | Hypothetical protein. | 0.521 |
LB_320 | LB_318 | LB_320 | LB_318 | Hypothetical protein. | Putative acyltransferase. | 0.827 |
LB_320 | LB_319 | LB_320 | LB_319 | Hypothetical protein. | Hypothetical protein. | 0.856 |
LB_320 | alr | LB_320 | LB_317 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.762 |
alr | LA_2699 | LB_317 | LA_2699 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | D-alanine--D-alanine ligase. | 0.915 |
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