Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MK0045 | MK0513 | MK0045 | MK0513 | Predicted GTPase of the YlqF family. | Predicted RNA-binding protein containing KH domain). | 0.595 |
| MK0045 | nop1 | MK0045 | MK0560 | Predicted GTPase of the YlqF family. | Fibrillarin-like rRNA methylase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.976 |
| MK0045 | rpl8A | MK0045 | MK1598 | Predicted GTPase of the YlqF family. | Ribosomal protein HS6-type (S12/L30/L7a); Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.903 |
| MK0045 | rpsE | MK0045 | MK0029 | Predicted GTPase of the YlqF family. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. | 0.835 |
| MK0045 | rpsI | MK0045 | MK1477 | Predicted GTPase of the YlqF family. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.963 |
| MK0045 | rpsK | MK0045 | MK1473 | Predicted GTPase of the YlqF family. | Ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.584 |
| MK0045 | sik1 | MK0045 | MK0559 | Predicted GTPase of the YlqF family. | Protein implicated in ribosomal biogenesis, Nop56p homolog. | 0.846 |
| MK0513 | MK0045 | MK0513 | MK0045 | Predicted RNA-binding protein containing KH domain). | Predicted GTPase of the YlqF family. | 0.595 |
| MK0513 | mra1 | MK0513 | MK0202 | Predicted RNA-binding protein containing KH domain). | Uncharacterized conserved protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.999 |
| MK0513 | nop1 | MK0513 | MK0560 | Predicted RNA-binding protein containing KH domain). | Fibrillarin-like rRNA methylase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.999 |
| MK0513 | rpl8A | MK0513 | MK1598 | Predicted RNA-binding protein containing KH domain). | Ribosomal protein HS6-type (S12/L30/L7a); Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.946 |
| MK0513 | rps6A | MK0513 | MK1446 | Predicted RNA-binding protein containing KH domain). | Ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family. | 0.999 |
| MK0513 | rpsD | MK0513 | MK1472 | Predicted RNA-binding protein containing KH domain). | Ribosomal protein related to S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| MK0513 | rpsE | MK0513 | MK0029 | Predicted RNA-binding protein containing KH domain). | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
| MK0513 | rpsI | MK0513 | MK1477 | Predicted RNA-binding protein containing KH domain). | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.978 |
| MK0513 | rpsK | MK0513 | MK1473 | Predicted RNA-binding protein containing KH domain). | Ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| MK0513 | sik1 | MK0513 | MK0559 | Predicted RNA-binding protein containing KH domain). | Protein implicated in ribosomal biogenesis, Nop56p homolog. | 0.999 |
| mra1 | MK0513 | MK0202 | MK0513 | Uncharacterized conserved protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | Predicted RNA-binding protein containing KH domain). | 0.999 |
| mra1 | nop1 | MK0202 | MK0560 | Uncharacterized conserved protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | Fibrillarin-like rRNA methylase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.999 |
| mra1 | rpl8A | MK0202 | MK1598 | Uncharacterized conserved protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | Ribosomal protein HS6-type (S12/L30/L7a); Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.933 |
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