Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FN0044 | nanA | FN0044 | FN1475 | Shikimate 5-dehydrogenase. | N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.706 |
FN0044 | rpsO | FN0044 | FN1979 | Shikimate 5-dehydrogenase. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.595 |
FN0318 | FN1380 | FN0318 | FN1380 | CITX protein. | Citrate lyase beta chain. | 0.981 |
FN0318 | nanA | FN0318 | FN1475 | CITX protein. | N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.805 |
FN1380 | FN0318 | FN1380 | FN0318 | Citrate lyase beta chain. | CITX protein. | 0.981 |
FN1380 | nanA | FN1380 | FN1475 | Citrate lyase beta chain. | N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.899 |
FN1470 | FN1472 | FN1470 | FN1472 | Hypothetical protein. | N-acetylneuraminate-binding protein. | 0.668 |
FN1470 | FN1473 | FN1470 | FN1473 | Hypothetical protein. | N-acetylneuraminate transporter large subunit. | 0.677 |
FN1470 | FN1474 | FN1470 | FN1474 | Hypothetical protein. | N-acetylmannosamine kinase. | 0.675 |
FN1470 | nanA | FN1470 | FN1475 | Hypothetical protein. | N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.803 |
FN1470 | nanE | FN1470 | FN1476 | Hypothetical protein. | N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P). | 0.659 |
FN1472 | FN1470 | FN1472 | FN1470 | N-acetylneuraminate-binding protein. | Hypothetical protein. | 0.668 |
FN1472 | FN1473 | FN1472 | FN1473 | N-acetylneuraminate-binding protein. | N-acetylneuraminate transporter large subunit. | 0.981 |
FN1472 | FN1474 | FN1472 | FN1474 | N-acetylneuraminate-binding protein. | N-acetylmannosamine kinase. | 0.697 |
FN1472 | nanA | FN1472 | FN1475 | N-acetylneuraminate-binding protein. | N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.705 |
FN1472 | nanE | FN1472 | FN1476 | N-acetylneuraminate-binding protein. | N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P). | 0.608 |
FN1473 | FN1470 | FN1473 | FN1470 | N-acetylneuraminate transporter large subunit. | Hypothetical protein. | 0.677 |
FN1473 | FN1472 | FN1473 | FN1472 | N-acetylneuraminate transporter large subunit. | N-acetylneuraminate-binding protein. | 0.981 |
FN1473 | FN1474 | FN1473 | FN1474 | N-acetylneuraminate transporter large subunit. | N-acetylmannosamine kinase. | 0.809 |
FN1473 | nanA | FN1473 | FN1475 | N-acetylneuraminate transporter large subunit. | N-acetylneuraminate lyase; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. | 0.826 |
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