STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1116Dipeptidyl carboxypeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (672 aa)    
Predicted Functional Partners:
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
      
 0.878
XCC3157
Aminopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.684
ygdR
Oligopeptide transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.518
XCC3158
Aminopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.513
yjdB
Inner membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.506
XCC1118
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.506
fliM
Flagellar protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
   0.497
ribD
Riboflavin-specific deaminase/5-amino-6-uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.493
ybjZ
ABC transporter permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.474
ybjZ-2
ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.457
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.