STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC11972-nitropropane dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (364 aa)    
Predicted Functional Partners:
nasA
Nitrate transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.918
nasD
Nitrite reductase (NAD(P)H); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
  0.900
nasE
Nitrite assimilation small subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
XCC2009
Nitrate reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
  0.900
XCC1198
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.791
XCC1196
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.778
entF
ATP-dependent serine activating enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.758
fabF
3-oxoacyl-[ACP] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.629
fabD
Malonyl CoA-ACP transacylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.602
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.581
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.