STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3740Transglycosylase, putative; Similar to SP:P46885 PID:882708 PID:974447 GB:U00096 PID:1789179; identified by sequence similarity; putative. (395 aa)    
Predicted Functional Partners:
CC_3741
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.810
CC_3739
Smr family protein; Identified by match to protein family HMM.
       0.795
secB
Protein-export protein SecB, putative; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.604
CC_0240
PTS system, IIA component; Identified by match to protein family HMM.
  
     0.459
rpsU
Ribosomal protein S21; Identified by match to TIGR protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.410
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.