STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS48373.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
AQS48372.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
AQS47682.1
Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
AQS46400.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.973
AQS48371.1
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.854
AQS49636.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.774
AQS48037.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.739
AQS48038.1
UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.739
AQS48173.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.739
AQS49565.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.739
AQS48375.1
Paraquat-inducible membrane protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.710
Your Current Organism:
Thioclava nitratireducens
NCBI taxonomy Id: 1915078
Other names: LMG 29614, LMG:29614, MCCC 1A07302, T. nitratireducens, Thioclava nitratireducens Liu et al. 2017, Thioclava sp. 25B10_4, strain 25B10_4
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