STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifZ1Nitrogen fixation protein NifZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)    
Predicted Functional Partners:
AIB12308.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.896
AIB12309.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.895
AIB12313.1
Protein fixU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.887
AIB12315.1
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.881
AIB12316.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.863
nifZ2
NifZ family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.786
AIB12336.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.777
AIB11847.1
FmdB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
AIB12333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
nifX
Nitrogen fixation protein NifX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.717
Your Current Organism:
Azospirillum brasilense
NCBI taxonomy Id: 192
Other names: A. brasilense, ATCC 29145, Azospirillum brasiliense, LMG 13127, LMG:13127, NBRC 102289, NRRL B-14647, Roseomonas fauriae, Spirillum lipoferum, bacterium ASAZOES-148, strain sp. 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.