STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panCPantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (282 aa)    
Predicted Functional Partners:
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
 
 
 0.999
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
 0.999
coaX
Putative transcriptional activator; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.
  
 
 0.922
flaG
Flagellar protein; Original (2000) note: Cj0547, flaG, possible flagellar protein, len: 121 aa; some similarity to e.g. TR:O33420 (EMBL:L81176) Pseudomonas aeruginosa FLAG (128 aa), fasta scores; opt: 169 z-score: 197.2 E(): 0.0011,31.4% identity in 102 aa overlap. 43.5% identity to HP0751; Updated (2006) note: Pfam domain PF03646 FlaG protein was identified within CDS. Further support given to product function. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane. Characterised within Pseud [...]
   
   0.769
dfp
Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
 
 
 0.722
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
  0.717
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
    
 
 0.705
birA
Original (2000) note: Cj0099, birA, possible biotin--[acetyl-CoA-carboxylase] synthetase, len: 217 aa; weak similarity to e.g. SW:BIRA_BACSU P42975 birA bifunctional protein (biotin operon repressor) (biotin--[acetyl-CoA-carboxylase] synthetase) (EC 6.3.4.15)(325 aa), blastp scores; E= 0.00011, 21% identity in 163 aa overlap; similarity does not include DNA-binding domain. 39.0% identity to HP1140; Updated (2006) note: Pfam domain PF03099 Biotin/lipoate A/B protein ligase family identified within CDS. Further support given to product function. Specific characterisation with acceptable [...]
  
 
 0.682
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
 
 0.672
bioA
Original (2000) note: Cj0307, bioA, probable adenosylmethionine-8-amino-7-oxononanoate aminotransferase, len: 427 aa; similar to many e.g. BIOA_ECOLI adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (429 aa), fasta scores; opt: 882 z-score: 1095.3 E(): 0, 35.8% identity in 411 aa overlap. 57.8% identity to HP0976. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site and Pfam match to entry PF00202 aminotran_3,Aminotransferases class-III pyridoxal-phosphate, score 383.00, E-value 1.1e-132; Updated (2006) note: Characterised within Esch [...]
   
 
 0.652
Your Current Organism:
Campylobacter jejuni NCTC 11168
NCBI taxonomy Id: 192222
Other names: C. jejuni subsp. jejuni NCTC 11168 = ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819, Campylobacter jejuni subsp. jejuni ATCC 700819 = NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168, Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
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