Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rnc | rplM | Cj1635c | Cj1480c | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.980 |
| rnc | rplS | Cj1635c | Cj0714 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.980 |
| rnc | rpmA | Cj1635c | Cj0095 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | Original (2000) note: Cj0095, rpmA, 50S ribosomal protein L27, len: 84 aa; highly similar to meny e.g. RL27_ECOLI 50S ribosomal protein L27 (84 aa), fasta scores; opt: 334 z-score: 627.0 E(): 1.1e-27, 65.4% identity in 81 aa overlap. 85.2% identity to HP0297. Contains PS00831 Ribosomal protein L27 signature and Pfam match to entry PF01016 Ribosomal_L27, Ribosomal L27 protein, score 189.40, E-value 5.5e-53; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus,putative not added to product function. Functional classification - Ribosomal protein [...] | 0.972 |
| rnc | rpmF | Cj1635c | Cj0330c | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 50S ribosomal protein L32; Original (2000) note: Cj0330c, rpmF, probable 50S ribosomal protein L32, len: 48 aa; similar to e.g. RL32_BACST 50S ribosomal protein L32 (56 aa), fasta scores; opt: 118 z-score: 174.5 E(): 0.018, 41.7% identity in 48 aa overlap. 72.9% identity to HP0200; Updated (2006) note: Pfam domain PF01783 Ribosomal L32p protein family identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and mod [...] | 0.970 |
| rnc | rpmG | Cj1635c | Cj0471 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 50S ribosomal protein L33; Original (2000) note: Cj0471, rpmG, probable 50S ribosomal protein L33, len: 52 aa; highly similar to many e.g. RL33_BACST 50S ribosomal protein L33 (49 aa), fasta scores; opt: 209 z-score: 388.8 E(): 2.3e-14, 59.2% identity in 49 aa overlap. 73.1% identity to HP1204. Contains PS00582 Ribosomal protein L33 signature and Pfam match to entry PF00471 L33, Ribosomal protein L33, score 79.10, E-value 9.3e-20; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification [...] | 0.969 |
| rnc | rpsB | Cj1635c | Cj1182c | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 0.969 |
| rnc | rpsF | Cj1635c | Cj1070 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.975 |
| rnc | rpsI | Cj1635c | Cj1479c | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 30S ribosomal protein S9; Original (2000) note: Cj1479c, rpsI, 30S ribosomal protein S9, len: 129 aa; similar to many e.g. RS9_ECOLI 30S ribosomal protein S9 (129 aa), fasta scores; opt: 400 z-score: 508.5 E(): 5.3e-21, 49.6% identity in 125 aa overlap. 77.5% identity to HP0083. Contains PS00360 Ribosomal protein S9 signature, and Pfam match to entry PF00380 S9, Ribosomal protein S9; Updated (2006) note: Characterised in Escherichia coli with acceptable similariy score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification; PMI [...] | 0.979 |
| rnc | rpsO | Cj1635c | Cj0884 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.983 |
| rnc | rpsP | Cj1635c | Cj0710 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | Original (2000) note: Cj0710, rpsP, 30S ribosomal protein S16, len: 75 aa; highly similar to many e.g. RS16_ECOLI 30S ribosomal protein S16 (82 aa), fasta scores; opt: 238 z-score: 352.6 E(): 2.4e-12, 45.9% identity in 74 aa overlap. 73.3% identity to HP1151. Contains PS00732 Ribosomal protein S16 signature, and Pfam match to entry PF00886 Ribosomal_S16; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification; PMID:336510. | 0.969 |
| rplM | rnc | Cj1480c | Cj1635c | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity). Belongs to the ribonuclease III family. | 0.980 |
| rplM | rplS | Cj1480c | Cj0714 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.998 |
| rplM | rpmA | Cj1480c | Cj0095 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Original (2000) note: Cj0095, rpmA, 50S ribosomal protein L27, len: 84 aa; highly similar to meny e.g. RL27_ECOLI 50S ribosomal protein L27 (84 aa), fasta scores; opt: 334 z-score: 627.0 E(): 1.1e-27, 65.4% identity in 81 aa overlap. 85.2% identity to HP0297. Contains PS00831 Ribosomal protein L27 signature and Pfam match to entry PF01016 Ribosomal_L27, Ribosomal L27 protein, score 189.40, E-value 5.5e-53; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus,putative not added to product function. Functional classification - Ribosomal protein [...] | 0.999 |
| rplM | rpmF | Cj1480c | Cj0330c | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L32; Original (2000) note: Cj0330c, rpmF, probable 50S ribosomal protein L32, len: 48 aa; similar to e.g. RL32_BACST 50S ribosomal protein L32 (56 aa), fasta scores; opt: 118 z-score: 174.5 E(): 0.018, 41.7% identity in 48 aa overlap. 72.9% identity to HP0200; Updated (2006) note: Pfam domain PF01783 Ribosomal L32p protein family identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and mod [...] | 0.997 |
| rplM | rpmG | Cj1480c | Cj0471 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L33; Original (2000) note: Cj0471, rpmG, probable 50S ribosomal protein L33, len: 52 aa; highly similar to many e.g. RL33_BACST 50S ribosomal protein L33 (49 aa), fasta scores; opt: 209 z-score: 388.8 E(): 2.3e-14, 59.2% identity in 49 aa overlap. 73.1% identity to HP1204. Contains PS00582 Ribosomal protein L33 signature and Pfam match to entry PF00471 L33, Ribosomal protein L33, score 79.10, E-value 9.3e-20; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification [...] | 0.998 |
| rplM | rpsB | Cj1480c | Cj1182c | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S2; Original (2000) note: Cj1182c, rpsB, 30S ribosomal protein S2, len: 263 aa; highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa), fasta scores; opt: 886 z-score: 997.3 E(): 0, 56.1% identity in 237 aa overlap. 69.1% identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2, and Pfam match to entry PF00318 S2, Ribosomal protein S2; Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score, so putative not added to product function. Functional classification -Ribosomal protein synthes [...] | 0.999 |
| rplM | rpsF | Cj1480c | Cj1070 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplM | rpsI | Cj1480c | Cj1479c | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S9; Original (2000) note: Cj1479c, rpsI, 30S ribosomal protein S9, len: 129 aa; similar to many e.g. RS9_ECOLI 30S ribosomal protein S9 (129 aa), fasta scores; opt: 400 z-score: 508.5 E(): 5.3e-21, 49.6% identity in 125 aa overlap. 77.5% identity to HP0083. Contains PS00360 Ribosomal protein S9 signature, and Pfam match to entry PF00380 S9, Ribosomal protein S9; Updated (2006) note: Characterised in Escherichia coli with acceptable similariy score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification; PMI [...] | 0.999 |
| rplM | rpsO | Cj1480c | Cj0884 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
| rplM | rpsP | Cj1480c | Cj0710 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Original (2000) note: Cj0710, rpsP, 30S ribosomal protein S16, len: 75 aa; highly similar to many e.g. RS16_ECOLI 30S ribosomal protein S16 (82 aa), fasta scores; opt: 238 z-score: 352.6 E(): 2.4e-12, 45.9% identity in 74 aa overlap. 73.3% identity to HP1151. Contains PS00732 Ribosomal protein S16 signature, and Pfam match to entry PF00886 Ribosomal_S16; Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification; PMID:336510. | 0.998 |
page 1 of 6