STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAW30059.1SMC-Scp complex subunit ScpB. (179 aa)    
Predicted Functional Partners:
GAW30060.1
Segregation/condensation protein A.
 
 
 0.999
GAW28085.1
Cytidylate kinase.
  
 0.977
GAW28401.1
Chromosome segregation protein SMC.
 
 
 0.853
GAW30061.1
tryptophan--tRNA ligase.
       0.798
GAW30063.1
Polynucleotide adenylyltransferase.
       0.795
GAW28312.1
DNA topoisomerase I.
  
    0.782
GAW30062.1
Peptidase M50.
       0.734
GAW29692.1
Ribosome biogenesis GTPase YlqF.
 
    0.692
GAW30054.1
RNA pseudouridine synthase.
  
  
 0.643
GAW29071.1
16S rRNA pseudouridine(516) synthase.
  
  
 0.589
Your Current Organism:
Carboxydocella sp. ULO1
NCBI taxonomy Id: 1926599
Other names: C. sp. ULO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.