STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI86701.1Outer membrane receptor for ferrienterochelin and colicins. (997 aa)    
Predicted Functional Partners:
SHI86731.1
Cna protein B-type domain-containing protein.
 
     0.950
SHI86824.1
Predicted Zn-dependent peptidase.
 
     0.873
SHI86669.1
FecR family protein.
 
    0.827
SHI86868.1
Uncharacterized iron-regulated protein.
 
    0.783
SHI86792.1
Predicted Zn-dependent peptidase.
 
     0.759
SHJ37108.1
Protein of unknown function.
  
     0.759
SHI86760.1
Hypothetical protein.
       0.741
SHJ03869.1
Right handed beta helix region.
  
     0.695
SHJ38921.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.684
SHI70261.1
Starch-binding associating with outer membrane.
  
     0.676
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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