STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ28263.1MoxR-like ATPase. (317 aa)    
Predicted Functional Partners:
SHJ28213.1
Hypothetical protein.
       0.797
SHJ28237.1
Periplasmic chaperone for outer membrane proteins SurA.
       0.797
SHI41756.1
Protein of unknown function DUF58.
  
 0.726
SHI34262.1
Protein of unknown function DUF58.
 
  
 0.723
SHJ28187.1
Hypothetical protein.
       0.535
SHJ28160.1
Hypothetical protein.
       0.516
SHJ28137.1
Beta-lactamase enzyme family protein.
       0.512
SHI41830.1
Ca-activated chloride channel family protein.
 
 
 0.505
SHI41868.1
Ca-activated chloride channel family protein.
 
 
 0.472
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
    
 
 0.454
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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