STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ61612.1Capsular exopolysaccharide family. (822 aa)    
Predicted Functional Partners:
SHJ38011.1
Polysaccharide export outer membrane protein.
 0.999
SHJ60575.1
Protein involved in gliding motility EpsA.
 0.999
SHJ60547.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.998
SHJ38789.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.953
SHJ61122.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.949
SHI50129.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.946
SHJ38045.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.942
SHI88625.1
Serine O-acetyltransferase.
 
 
 0.863
SHJ37925.1
Tyrosine-protein phosphatase YwqE.
 
  
 0.854
SHI50037.1
UDP-GlcNAc3NAcA epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
 0.845
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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