STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ57025.1RNA polymerase sigma-70 factor, ECF subfamily. (179 aa)    
Predicted Functional Partners:
SHJ57001.1
FecR family protein.
 
   0.774
SHJ61781.1
FecR family protein.
  
   0.535
SHI51523.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.532
SHI92161.1
FecR family protein.
  
   0.484
SHJ87481.1
FecR family protein.
  
   0.484
SHJ62777.1
FecR family protein.
  
   0.480
SHJ51051.1
Anti-sigma-K factor rskA.
  
 
 0.478
SHJ69973.1
FecR family protein.
  
   0.473
SHI46296.1
FecR family protein.
  
   0.452
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.448
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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