STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ74888.1Hypothetical protein. (432 aa)    
Predicted Functional Partners:
SHJ74918.1
Putative hydrolase of the HAD superfamily.
       0.797
SHI95391.1
Protein of unknown function.
  
     0.694
SHJ74861.1
DNA repair protein RadC; Belongs to the UPF0758 family.
       0.683
SHI69530.1
Protein involved in gliding motility GldN.
  
     0.642
SHI36237.1
Protein of unknown function.
  
     0.639
SHJ74977.1
Hypothetical protein.
       0.631
SHJ74947.1
Hypothetical protein.
       0.609
SHJ41767.1
Smr domain-containing protein.
  
     0.603
SHJ75004.1
Hypothetical protein.
 
     0.572
SHI69340.1
Arginase family enzyme; Belongs to the arginase family.
  
     0.557
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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