STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ78952.1ATPase family associated with various cellular activities (AAA). (450 aa)    
Predicted Functional Partners:
SHJ78966.1
Hypothetical protein.
 
 
 0.959
SHJ79014.1
Hypothetical protein.
 
     0.947
SHJ79055.1
Hypothetical protein.
 
     0.943
SHJ78990.1
Hypothetical protein.
 
     0.943
SHJ79038.1
Baseplate J-like protein.
 
     0.943
SHJ79104.1
Rhs element Vgr protein.
 
     0.941
SHJ79127.1
LysM domain-containing protein.
 
   
 0.940
SHJ79080.1
Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion.
 
     0.938
SHJ79174.1
Conserved hypothetical phage tail region protein.
 
     0.938
SHJ79197.1
Conserved hypothetical phage tail region protein.
 
     0.938
Your Current Organism:
Pseudozobellia thermophila
NCBI taxonomy Id: 192903
Other names: Costertonia sp. KCTC 22017, DSM 19858, JCM 11733, KCTC 22016, KMM 3531, P. thermophila, Pseudozobellia thermophila Nedashkovskaya et al. 2009, Zobellia sp. KMM 3531
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