ONI87519.1 protein (Actinosynnema sp. ALI144)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ONI87519.1

ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (324 aa)

Predicted Functional Partners:

ONI87626.1

0.980

ONI87625.1

0.975

ONI72941.1

0.958

ONI75306.1

0.948

ONI86413.1

0.944

ONI70985.1

0.944

ONI90365.1

0.943

ALI144C_24765

0.943

ONI79935.1

0.943

ONI70486.1

0.943

Your Current Organism:

Actinosynnema sp. ALI144

NCBI taxonomy Id: 1933779
Other names: A. sp. ALI-1.44, Actinosynnema sp. ALI-1.44

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALI144C_24765	ONI70985.1	ALI144C_24765	ALI144C_51450	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
ALI144C_24765	ONI72941.1	ALI144C_24765	ALI144C_44010	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
ALI144C_24765	ONI75306.1	ALI144C_24765	ALI144C_38555	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
ALI144C_24765	ONI79935.1	ALI144C_24765	ALI144C_24770	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ALI144C_24765	ONI87519.1	ALI144C_24765	ALI144C_09025	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.943
ALI144C_24765	ONI87625.1	ALI144C_24765	ALI144C_09020	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
ONI70486.1	ONI70985.1	ALI144C_48465	ALI144C_51450	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ONI70486.1	ONI72941.1	ALI144C_48465	ALI144C_44010	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
ONI70486.1	ONI75306.1	ALI144C_48465	ALI144C_38555	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
ONI70486.1	ONI79935.1	ALI144C_48465	ALI144C_24770	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ONI70486.1	ONI87519.1	ALI144C_48465	ALI144C_09025	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.943
ONI70486.1	ONI87625.1	ALI144C_48465	ALI144C_09020	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
ONI70985.1	ALI144C_24765	ALI144C_51450	ALI144C_24765	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
ONI70985.1	ONI70486.1	ALI144C_51450	ALI144C_48465	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ONI70985.1	ONI75306.1	ALI144C_51450	ALI144C_38555	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
ONI70985.1	ONI86413.1	ALI144C_51450	ALI144C_10825	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
ONI70985.1	ONI87519.1	ALI144C_51450	ALI144C_09025	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.944
ONI70985.1	ONI87626.1	ALI144C_51450	ALI144C_09030	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ONI70985.1	ONI90365.1	ALI144C_51450	ALI144C_03190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
ONI72941.1	ALI144C_24765	ALI144C_44010	ALI144C_24765	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About