STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOO01859.1Hypothetical protein. (718 aa)    
Predicted Functional Partners:
degS_1
Signal transduction histidine-protein kinase/phosphatase DegS.
   
  0.882
tctD
Transcriptional regulatory protein tctD.
   
 0.882
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.882
fixL
Sensor protein FixL.
   
  0.880
rcsC
Sensor histidine kinase RcsC.
   
  0.879
pdeB_1
Cyclic di-GMP phosphodiesterase PdeB.
   
 
  0.863
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
  0.780
OOO01860.1
Hypothetical protein.
       0.773
OOO01122.1
Putative signaling protein.
   
  0.768
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
   
 
 0.764
Your Current Organism:
Chromatiales bacterium USCgTaylor
NCBI taxonomy Id: 1934255
Other names: C. bacterium USCg_Taylor, Chromatiales bacterium USCg_Taylor
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.