STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbgA_4Beta-galactosidase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the glycosyl hydrolase 2 family. (1080 aa)    
Predicted Functional Partners:
ARN57786.1
O-Glycosyl hydrolase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
 
    0.633
apu
Alpha-amylase/pullulanase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
 
    0.606
yteR_1
Unsaturated rhamnogalacturonyl hydrolase YteR; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
 
     0.549
yteR_2
Unsaturated rhamnogalacturonyl hydrolase YteR; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
 
     0.535
ARN57920.1
Laminin G domain protein; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
     0.505
xylR_11
Xylose operon regulatory protein; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
     
 0.493
ARN56637.1
Beta-xylosidase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the glycosyl hydrolase 43 family.
  
    0.477
ARN56274.1
Glycosyl hydrolase catalytic core; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
     0.456
ARN57319.1
Phosphonate utilization associated putative membrane protein; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
     0.450
ARN55951.1
Beta-xylosidase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the glycosyl hydrolase 43 family.
 
     0.447
Your Current Organism:
Sedimentisphaera salicampi
NCBI taxonomy Id: 1941349
Other names: DSM 101733, JCM 31929, KCTC 15597, Phycisphaerae bacterium SM-PulAB-D3, Phycisphaerae bacterium ST-PulAB-D4, S. salicampi, Sedimentisphaera salicampi Spring et al. 2018, bacterium SM-PulAB-D3, bacterium ST-PulAB-D4, strain ST-PulAB-D4
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