STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0433ATPase, ParA family. (292 aa)    
Predicted Functional Partners:
tadB
tadB protein; Identified by similarity to GP:7208429; similarity to EGAD:106456; match to protein family HMM PF00482.
 
  
 0.996
CT0434
Type II secretion system protein; Identified by match to protein family HMM PF00437.
 
  
 0.975
CT0429
Conserved hypothetical protein; Identified by similarity to GP:7208424; match to protein family HMM PF06981.
 
  
 0.966
CT0436
TadC protein; Identified by similarity to GP:5670332; match to protein family HMM PF00482.
 
  
 0.963
CT0430
Type II secretion system protein; Identified by similarity to EGAD:97396; match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
  
 0.944
CT0431
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.928
CT0431.1
Conserved hypothetical protein; Identified by similarity to GB:CAH35809.1.
 
     0.854
smc
SMC family protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
      
 0.738
CT0428
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.615
ftsI
Penicillin-binding protein 3; Identified by similarity to EGAD:15878; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
      
 0.580
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.