node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CT0011 | pdaD | CT0011 | CT0562 | Deoxyhypusine synthase, putative; Identified by similarity to EGAD:77231; match to protein family HMM PF01916; Belongs to the deoxyhypusine synthase family. | Conserved hypothetical protein; Identified by similarity to EGAD:104988; match to protein family HMM PF01862; match to protein family HMM TIGR00286; Belongs to the PdaD family. | 0.657 |
CT0565 | CT0567 | CT0565 | CT0567 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | Hypothetical protein; Identified by Glimmer2; putative. | 0.778 |
CT0565 | CT0568 | CT0565 | CT0568 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | 0.618 |
CT0565 | mrdA | CT0565 | CT0566 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | Penicillin-binding protein 2; Identified by similarity to EGAD:7589; match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.778 |
CT0565 | pdaD | CT0565 | CT0562 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | Conserved hypothetical protein; Identified by similarity to EGAD:104988; match to protein family HMM PF01862; match to protein family HMM TIGR00286; Belongs to the PdaD family. | 0.525 |
CT0565 | smpB | CT0565 | CT0564 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | smpB family protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.765 |
CT0565 | tyrS | CT0565 | CT0563 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.703 |
CT0567 | CT0565 | CT0567 | CT0565 | Hypothetical protein; Identified by Glimmer2; putative. | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | 0.778 |
CT0567 | CT0568 | CT0567 | CT0568 | Hypothetical protein; Identified by Glimmer2; putative. | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | 0.654 |
CT0567 | mrdA | CT0567 | CT0566 | Hypothetical protein; Identified by Glimmer2; putative. | Penicillin-binding protein 2; Identified by similarity to EGAD:7589; match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.782 |
CT0567 | pdaD | CT0567 | CT0562 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by similarity to EGAD:104988; match to protein family HMM PF01862; match to protein family HMM TIGR00286; Belongs to the PdaD family. | 0.525 |
CT0567 | smpB | CT0567 | CT0564 | Hypothetical protein; Identified by Glimmer2; putative. | smpB family protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.762 |
CT0567 | tyrS | CT0567 | CT0563 | Hypothetical protein; Identified by Glimmer2; putative. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.703 |
CT0568 | CT0565 | CT0568 | CT0565 | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. | 0.618 |
CT0568 | CT0567 | CT0568 | CT0567 | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | Hypothetical protein; Identified by Glimmer2; putative. | 0.654 |
CT0568 | mrdA | CT0568 | CT0566 | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | Penicillin-binding protein 2; Identified by similarity to EGAD:7589; match to protein family HMM PF00905; match to protein family HMM PF03717. | 0.885 |
CT0568 | pdaD | CT0568 | CT0562 | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | Conserved hypothetical protein; Identified by similarity to EGAD:104988; match to protein family HMM PF01862; match to protein family HMM TIGR00286; Belongs to the PdaD family. | 0.423 |
CT0568 | smpB | CT0568 | CT0564 | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | smpB family protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.610 |
CT0568 | tyrS | CT0568 | CT0563 | Rod shape-determining protein MreC, putative; Identified by match to protein family HMM PF04085. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.569 |
CT1508 | pdaD | CT1508 | CT0562 | Conserved hypothetical protein; Identified by similarity to GP:6460171; match to protein family HMM PF04371; Belongs to the agmatine deiminase family. | Conserved hypothetical protein; Identified by similarity to EGAD:104988; match to protein family HMM PF01862; match to protein family HMM TIGR00286; Belongs to the PdaD family. | 0.902 |