STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0695Identified by match to protein family HMM PF01909. (95 aa)    
Predicted Functional Partners:
thiF
Thiamin biosynthesis protein ThiF; Identified by similarity to EGAD:8413; match to protein family HMM PF00899; match to protein family HMM PF05237.
       0.470
thiH
ThiH protein; Identified by similarity to EGAD:7866; match to protein family HMM PF04055; match to protein family HMM PF06968.
       0.470
thiG
ThiG protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.470
CT0693
Hypothetical protein; Identified by Glimmer2; putative.
       0.412
thiS
Thiamine biosynthesis protein ThiS; Identified by similarity to EGAD:143246; match to protein family HMM PF02597; match to protein family HMM TIGR01683.
       0.412
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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