STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0884Hypothetical protein; Identified by Glimmer2; putative. (522 aa)    
Predicted Functional Partners:
CT0883
ATPase, ParA family; Identified by match to protein family HMM PF01656.
 
     0.903
ppk-1
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.
     
 0.852
CT0885
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.772
ppk-2
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.
     
 0.748
CT0886
Hypothetical protein; Identified by Glimmer2; putative.
       0.718
CT0050
Conserved hypothetical protein; Identified by similarity to EGAD:28546; match to protein family HMM PF04301.
  
     0.488
CT1269
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.451
CT1721
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.449
sixA
Phosphohistidine phosphatase SixA; Identified by similarity to EGAD:90967; match to protein family HMM PF00300; match to protein family HMM TIGR00249.
 
     0.448
CT0208
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.418
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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