STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT1268Acetyltransferase GNAT family; Identified by match to protein family HMM PF00583. (164 aa)    
Predicted Functional Partners:
CT1269
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CT1267
Amino acid efflux protein, putative; Identified by similarity to SP:P27847; match to protein family HMM PF01810.
 
    0.711
chlG
Bacteriochlorophyll synthase, 34 kDa subunit; Identified by similarity to SP:P33326; match to protein family HMM PF01040; match to protein family HMM TIGR01476.
  
    0.589
CT1266
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.493
CT1272
Conserved hypothetical protein; Identified by similarity to EGAD:18630; match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.
       0.423
CT1271
Glycosyl transferase; Identified by match to protein family HMM PF00535.
       0.407
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.